Complex MRI analysis · anatomical phase-space cartography

Upload the study.
Map the state.
Keep the anatomy attached.

PsiPi Quantum Systems analyzes MRI as a structured complex state rather than a stack of magnitude-only pictures. The working system accepts study files, builds anatomical and phase-space ledgers, tracks multiscale directional structure, and produces inspectable objects that can be compared across slices, modalities, scales and visits.

DICOM intakeExisting upload endpoint for study files and analysis intake.
Geometry ledgerPins, pairs, facets, backbones, shells and object passports.
Complex stateMagnitude, phase, real/imaginary structure, angular time and residuals.
Visit comparisonShared objects, mesh changes, chamber/orbit structure and longitudinal descriptors.
01 / Orchard Gate workflow

A working front door to the analysis stack.

Orchard Gate is the operational pattern: accept a study, inventory it, process the complex state, bind the result to anatomy, and expose the resulting ledger for review. The dashboard is not a mock-up of a future idea; it is the interface model for analysis outputs already produced by the stack.

01 INTAKE
Upload study filesDICOM and related study artifacts enter through the existing upload route.
02 INVENTORY
Read the acquisitionSeries, modality, dimensions, slices, visits and source metadata are organized before interpretation.
03 GEOMETRY
Build anatomical objectsPins, LiteralPairs, facets, wedges, PairBackbone and ORB representations establish local support.
04 COMPLEX STATE
Track phase-space behaviorDTCWT direction, phase, residual, curl, angular time, shell telemetry and pair allocation are retained.
05 LEDGER
Attach every resultEach state remains tethered to slice, object, geometry, chamber/orbit and source observation.
06 REVIEW
Inspect and compareDashboard views expose object summaries, visit changes, representative figures and machine-readable outputs.
02 / Demonstrated outputs

What the system has already shown it can do.

The research stack has already produced repeatable object-level outputs across structural MRI, multiscale phase analysis and visit comparison. These are the basis of the site.

eigenMRI
542,454
pins in a single Kirby21 FLAIR analysis

Large-scale local state extraction with multi-Q shell measurements and retained anatomical correspondence.

Weyl inventory
17
objects distributed across C1–C6 in a later chamber run

Observed objects can be placed into a chamber inventory while preserving radius, angle and object weight.

Phase-object harvest
14
retained objects in the curated QSFP/SU(2)/Casimir harvest

Objects carry phase, cycle, flux-drift and Casimir fields instead of being reduced to a scalar score.

ORB backbone
117–125
example envelope around best slice 121

A rendered backbone linked pins and ribbons back to the source anatomy and local envelope.

Pair structure

Carrier, anchor and suppressed routes

Corbino–SU(2) decoding separated dominant SU2_13 carrier behavior, minority SU2_12 anchors and zero SU2_23 argmax assignments in the curated harvest while preserving continuous pair allocation separately.

Shell telemetry

Local transport instead of a static label

Dihedral state, structural rank, shell prediction, angular time, phase velocity, inertia, red/blue shift class and triangle counts are logged at object level.

Longitudinal geometry

Visit-to-visit mesh comparison

ORB mesh, shared pair structure and state descriptors have been compared across visits, preserving both geometric and phase-space deltas.

03 / Core method

The ledger is the product of the observation.

PsiPi does not begin by deciding what an unknown phase-space object is. It records where the object lives, how it is oriented, how it changes, and which state-space descriptions remain consistent with that observation.

LedgerRepresentative fieldsWhat it answers
Anatomicalslice, XYZ, modality, visit, pinID, facetID, hingeID, backboneIDWhere is the observation attached?
Complex statereal, imaginary, magnitude, phase, mixed/null supportWhat part of the reconstructed complex state is present?
DirectionalDTCWT scale, orientation, complex coefficient energy, phase shiftWhich directions and scales carry the local response?
Geometricedge/facet support, normals, dihedral angle, curl, triangle deformationHow does local geometry evolve?
TemporalTR, microtime, angular time, persistence, phase velocity, inertiaWhen does the state change and how long does it persist?
State-spaceshell, Weyl chamber, orbit, pair allocation, Cartan positionHow is the observed object organized in the derived state space?
Algebraic projectionL1…L8; L1/L4/L6; L2/L5/L7; L3/L8Which real, imaginary and diagonal components describe the observed state?
04 / fMRI reformulation

Preserve the complex signal long enough to map its patterns.

MRI data are inherently complex. The fMRI program extends the same cartographic method into time-resolved acquisition: preserve real and imaginary structure, let the DTCWT supply multiscale directionality, measure local geometric change, and classify only after the state has been observed across time and anatomy.

Complex observation

Real / imaginary / mixed / null

Imaginary values are not treated as automatic biological meaning. They are retained as part of the measured state so spatial, temporal and multiscale patterns can emerge or fail to emerge in the ledger.

Microtime

Directional local trajectories

DTCWT coefficients, angular time, phase velocity and local deformation provide a way to follow fine state changes rather than collapsing the entire run into one magnitude trajectory.

Physiology + vascular context

Separate BOLD, physiology and flow

Cardiac and respiratory traces can be carried alongside the complex ledger. TOF and other vascular acquisitions provide an independent anatomical/flow-sensitive context when cerebral-flow questions are being asked.

From a local “collapse” to a tracked redistribution.

When the L3/L8 diagonal contracts, PsiPi does not stop at the word collapse. The same object can be followed through DTCWT direction, facet/dihedral change, L2/L5/L7 imaginary-pair activity, pair allocation, chamber/orbit position and residual timing. The result is a traceable state transition attached to anatomy.

05 / Review surface

Upload → dashboard → inspect the original.

The intended review surface follows the Orchard Gate model: a study lands in the system, analysis outputs are summarized in a dashboard, and every summary points back to the original image, object ledger, figure or machine-readable record.

Study dashboard

Series inventory, source study, modality/visit organization, object counts, processing history and top-level quality/state summaries.

Object browser

Anatomical object cards with pins, ribbons, pair relations, shell state, chamber/orbit address and representative phase-space measurements.

Comparison view

Visit-to-visit or modality-to-modality deltas with direct access to source figures, tables and exported ledgers.

Operational entry point

Orchard Gate upload is live.

The existing upload route is the natural front door for the next iteration of the public workflow.